Scaffold Ga0256397_1000697

Overview

Basic Information

• Taxon OID: 3300028436
• Scaffold ID: Ga0256397_1000697
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - Kryos LI F3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2889
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.9283
  • Long. (^o): 22.0216
  • Depth (m): 3337

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F016882	Metagenome / Metatranscriptome	244	Y
F053550	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256397_10006973	F005364	AGGA	MNKLDLQNKLRSLIEEEVQSVLAERSYKFGGLLDPDKFDPVDPEVHIVGFGTMVRSSLRREIVTRLEGAYKTAKSASAGGPSSYDKFKSLEGVLEDKGILMQQIKAEAEIANELEQLRTKGGRRAIPIPKQF
Ga0256397_10006976	F016882	N/A	MYYTAKVKIAIDSPKGVKWNTETYLVNAVSVTHAESLVTEDFANDGIEFEVKSVSASQVIKVIGNTKKI
Ga0256397_10006978	F053550	N/A	MKIDKNKKRVLKEYPDAYIDTMAGGIRVMNGDDFIAEEFYMPITTNVDTAWKYAALACKTAQNFNRTHPMRMELSEFESKYNRINNRKRRGRRNVK