Scaffold Ga0256397_1000041

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256397_1000041

Scaffold Ga0256397_1000041

Overview

Basic Information
Taxon OID	3300028436 Open in IMG/M
Scaffold ID	Ga0256397_1000041 Open in IMG/M
Source Dataset Name	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - Kryos LI F3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8840
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	34.9283	Long. (^o)	22.0216	Alt. (m)		Depth (m)	3337
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015345	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256397_10000413	F015345	N/A	MTSIDIYGIKEQIVAILKADTTNLWDSTPNSKTKFRKIEAGAPSPKAAQEPPLPRCWVTSDTIVANINHIGVVDSNAHILDEYELRINIVFVVEAKDGPKTEEAIDDFTKSIIEQIDTNYDLRTPGGNESTRVAESSELLNIQDLPQQFQGDRVRGRVIKYKVTVRA

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