NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256397_1000024

Scaffold Ga0256397_1000024


Overview

Basic Information
Taxon OID3300028436 Open in IMG/M
Scaffold IDGa0256397_1000024 Open in IMG/M
Source Dataset NameSeawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - Kryos LI F3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13087
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)34.9283Long. (o)22.0216Alt. (m)Depth (m)3337
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007003Metagenome / Metatranscriptome360Y
F040325Metagenome / Metatranscriptome162Y
F047713Metagenome149N
F056888Metagenome / Metatranscriptome137N
F074009Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0256397_100002416F047713AGGAGMEIIGQGEVAALSIIKDMFGNSSEYMTQVKLSNMVTPEYLETFSERQLKETIDIVVVTPFECLAIRVQDKHHNSDRMATIDNIQKLMLEWNGWKVVDIWHYECKELWKDKVNERSRMELEMAIKESSVE
Ga0256397_10000242F040325N/AMARRKIGNSHTTICVTWEDKELFRKFASFVKKTRTGNLYESDAVLFAKMLSQFKDNNPVGDVSNTTYPTKS
Ga0256397_10000243F007003N/AMIHFFTKNINQKTYTDIVERTIMLNGHNGKSDSGYTALCNFRDNWTLNIIPVEDQEDFKAFYNHLDIETSDGIAWGVTGIKVIYMFVNDSKNPFILRSNVMPLAHELLHAIYQDAVGTFHITRKYDAPEGKAGTRGAAASVIVHDVWYGSKKTIKFWIRHSFMWLPVTIPFCPVKQAKEDYPI
Ga0256397_10000244F074009N/AMGTRIKGKFAGQCKICGSDWRVGDDIYYQKDPKAICSDKECFNEQGGTLTNYTPKQGTLTSGGGWGKTPIITKLPDVEISDDVKKITEYWDQFFVVAHHKTKAVYPQEDVNGDRFGQIRSKMMDQFMGLTNMINK
Ga0256397_10000245F056888N/AMNVSEVLDIKGSAENSKKLVVGDKITIQGFHIKNVDDVGAEVAEISTTEGLRHSFGKTIIGQAKSDYWINVVEKCVDKDAADGLDAYVVEREAEKTGRMMLCLSMFPPKN
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