Basic Information | |
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Taxon OID | 3300028436 Open in IMG/M |
Scaffold ID | Ga0256397_1000024 Open in IMG/M |
Source Dataset Name | Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - Kryos LI F3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13087 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (50.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 34.9283 | Long. (o) | 22.0216 | Alt. (m) | Depth (m) | 3337 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007003 | Metagenome / Metatranscriptome | 360 | Y |
F040325 | Metagenome / Metatranscriptome | 162 | Y |
F047713 | Metagenome | 149 | N |
F056888 | Metagenome / Metatranscriptome | 137 | N |
F074009 | Metagenome | 120 | N |
Protein ID | Family | RBS | Sequence |
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Ga0256397_100002416 | F047713 | AGGAG | MEIIGQGEVAALSIIKDMFGNSSEYMTQVKLSNMVTPEYLETFSERQLKETIDIVVVTPFECLAIRVQDKHHNSDRMATIDNIQKLMLEWNGWKVVDIWHYECKELWKDKVNERSRMELEMAIKESSVE |
Ga0256397_10000242 | F040325 | N/A | MARRKIGNSHTTICVTWEDKELFRKFASFVKKTRTGNLYESDAVLFAKMLSQFKDNNPVGDVSNTTYPTKS |
Ga0256397_10000243 | F007003 | N/A | MIHFFTKNINQKTYTDIVERTIMLNGHNGKSDSGYTALCNFRDNWTLNIIPVEDQEDFKAFYNHLDIETSDGIAWGVTGIKVIYMFVNDSKNPFILRSNVMPLAHELLHAIYQDAVGTFHITRKYDAPEGKAGTRGAAASVIVHDVWYGSKKTIKFWIRHSFMWLPVTIPFCPVKQAKEDYPI |
Ga0256397_10000244 | F074009 | N/A | MGTRIKGKFAGQCKICGSDWRVGDDIYYQKDPKAICSDKECFNEQGGTLTNYTPKQGTLTSGGGWGKTPIITKLPDVEISDDVKKITEYWDQFFVVAHHKTKAVYPQEDVNGDRFGQIRSKMMDQFMGLTNMINK |
Ga0256397_10000245 | F056888 | N/A | MNVSEVLDIKGSAENSKKLVVGDKITIQGFHIKNVDDVGAEVAEISTTEGLRHSFGKTIIGQAKSDYWINVVEKCVDKDAADGLDAYVVEREAEKTGRMMLCLSMFPPKN |
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