Scaffold Ga0256397_1000022

Overview

Basic Information

• Taxon OID: 3300028436
• Scaffold ID: Ga0256397_1000022
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - Kryos LI F3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13162
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (39.13%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.9283
  • Long. (^o): 22.0216
  • Depth (m): 3337

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F016619	Metagenome / Metatranscriptome	246	Y
F034394	Metagenome	175	Y
F042629	Metagenome	158	Y
F051547	Metagenome	144	N
F053638	Metagenome	141	Y
F071758	Metagenome / Metatranscriptome	122	Y
F102085	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256397_100002211	F016619	N/A	MAITIEQNADHKSLTGKTLSIQSELTSKLKSTIVDVTYGASDNYATNGNTVDLSLGGRISTVIGAEILHSDKGLLLQYVPAAAGAAATGKIKAYGQEPTSATSTVIALGELDNADTAVNSMTIRIRIIGF
Ga0256397_100002215	F051547	AGG	MIDPLLITVLAVIGGGAMNTVRGYLGATGEAYSAKKFFGALIVSTFAGIAVAQTLSIAGIGLVELVLIGLTVGFSVDFAVSKAKK
Ga0256397_100002217	F071758	N/A	MDEKCKKCKITKYGYTDGQHSIFICFKCGRYDGISGGDISFINKINEEPMMLLLMIKDKTLTPIS
Ga0256397_100002218	F102085	N/A	MATSIHVFETLNMFNKIYGTNADDIEHKMPLIDLYVKSDKLWVVTNSNNMKEQPRLNRSIVHFRKDNAKEWLEGDEKLVTHGKMRFNYKNNQLEFFPKRFSFRIGSKLLRKPLLSMRVGRYFGFREGKCKIDYDKRYYDFKNDRMIFILENSDEV
Ga0256397_10000222	F053638	N/A	MTLIPIEIMYGGKKEIIEFEDSLTFGDTEMLIGNSVDLSDVTKPKIDLQNYRLNLLALTIKKAPFKTGDITAIKMTDAKVIKSILKEIVKVHPLTSYIEDWMETFISSEELSKLDTPSTTIVPPNSDGTKKRLTNKK
Ga0256397_100002220	F001235	GGAG	LPEKLETNENANDMTKKLWEKHQADEYTKVNEYKEGVCLGCMKVDRAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCNHYKFNIEQVNGRFCNTCHSRIAKITKEYNKKGGFMKVDPFWIKMRKSHGKDFKKILGGNNHSNRR
Ga0256397_10000224	F042629	AGGAG	LLWINWRCTIIVITTYDAVDDIIELIRSKWSDLRPPHITKVWEKRTVGFIDDRSDEIVVSPKGENIQYFGLGGSSFFHEQIIELDIRTYQNIKRHNKVVKEVVKIIKDNIVGTTYTDLRVIGSFSRNYQFRNMFDYVITISYRKADPS
Ga0256397_10000227	F034394	N/A	MVTTTTYCSVNDIIDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREIHDLPLLYTFGWGTPLFLQHRNILPFDSSQGDKIEVWKGASAEWEDIVNSTQWYHAEYEYGKLFLRGYIFTILRKNRVRVTYRYGGENYAGDTTIPLDITDAIIKMTAIEVMNTSFRMDEIPSGGSVSPSESKRFWQEDIDLCVSNRREVFVIP