Scaffold Ga0228615_1174403

Overview

Basic Information

• Taxon OID: 3300028418
• Scaffold ID: Ga0228615_1174403
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 16D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 540
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage HTVC031P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002485	Metagenome / Metatranscriptome	555	Y
F014447	Metagenome	263	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228615_11744031	F002485	GGAGG	MKTQIDSKSLYFKNIGNNTVYYSYNTTVAIKTPIDTYVSENVWSVTTAKHLNRIEELTGSNREYRMKYKHFREFCINNNINKHYN
Ga0228615_11744032	F014447	N/A	EITKHNYKAFGIQNNREFRKYKSRALKDLNSNSLIFQKYYKPVKSSIYNSINQSIQGGKSKNARYNHSL