NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228615_1043062

Scaffold Ga0228615_1043062


Overview

Basic Information
Taxon OID3300028418 Open in IMG/M
Scaffold IDGa0228615_1043062 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 16D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1396
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006958Metagenome361N
F030557Metagenome185N

Sequences

Protein IDFamilyRBSSequence
Ga0228615_10430623F006958GGAMSKIEHEINQYLYVRSNIINILADAAIAERFIRAPNNRRCPSMYQMLETYYDKKDWGYHAEPKLKLRGTPKQMQNYDTAIDLLLMIETDISDDPVLMRKISWMRANRNKWTVIGKYFGIHRTSVKRMYDRVLDKLSNKVITQSVDILIKKFS
Ga0228615_10430624F030557N/ATDPNIINAALTDKEFRIYHYCCSNYNVQKRSAYIRIVDIAGLFQLSKKEVEELLIKLSQIKVNDLPLISMKQEKYISFDMPSHKKFIESLGFKKYSNQGFRTLNGHFKQIKDAEQIKIRSYLYPNLDQWELLEKLEGLPTEEFNKVKPEQLQYPWILKKCQR
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