NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228614_1004883

Scaffold Ga0228614_1004883


Overview

Basic Information
Taxon OID3300028416 Open in IMG/M
Scaffold IDGa0228614_1004883 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 15D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4311
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006896Metagenome / Metatranscriptome362Y
F023607Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0228614_10048831F023607N/AMHIYKLVFDTEQQGKQILIDNNVWQEVTIEGVTTMQYINGTKGVVNIGKVVKTQGTYDPDSHEITPPIYYPGYAYDVMSTDELDFGSFEVYPADNAVHQFYGYPRNAEVPKN
Ga0228614_10048833F006896N/AMLKRWRYYLKKLKTKMANEIYPVSWWGNPVQNGWGGIYYDFAYPSAIPSLLTTLQARASYYENVTCTTATLTELENIE

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