NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228614_1002748

Scaffold Ga0228614_1002748


Overview

Basic Information
Taxon OID3300028416 Open in IMG/M
Scaffold IDGa0228614_1002748 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 15D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6273
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013081Metagenome / Metatranscriptome274N
F043091Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0228614_100274813F013081AGGAMDLIKIVKTIEPEYKNTDQCINPLPNEVELQLDNKDYLIEVSLKEGVLKTNFWQGEEKYNASDDDINYIYNYLEHHLLNKIEETKVYYNAHNYNYQIWN
Ga0228614_100274814F043091N/AMELTEKKLEKISGAILSSFINLHLLEDAEKIGLFRQRVRNNIRRTISDLKEIEINYYNKIEEVDEKELGDKLTANKLIFLDWVLNKFDFNDFCKIQEVCLAYEADKERITQVTDEVLINNGSEQIDE
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