Scaffold Ga0306867_1025851

Overview

Basic Information

• Taxon OID: 3300028415
• Scaffold ID: Ga0306867_1025851
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #831 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1255
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006455	Metagenome	373	Y
F066289	Metagenome	127	Y
F086358	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0306867_10258511	F066289	GGA	MSDEIIVSSTEALHDDYANLKLQTPVGYAGIAGIVVNGCNIICGNCATDAELADNDNGAIFGNSEWDYPAPVCEDCQKPLNVNLLVYKSSDSELHFRLRMTEELGGFADTD
Ga0306867_10258512	F006455	N/A	MNQQVKPPAGWTEIEPEFEFQRQTFQRRRDGLVVSVEQELHAAYNVVKLPENYYQNNRVIGCIEVGVEPEDAAESAHEWMEQNNRR
Ga0306867_10258513	F086358	N/A	MVLQWAEESIGPPNDKGLERYKRAVIAETNHLAFDWLDREIIQRQFDIIQGQTYDHPSHYAREIALKQIETREYEDDNYDSRLRLWDELIGFTRYNVEVEYEITEPDGTCHERSHQGLYWHQSQTKLHNQRLDTLQRTNNAEVDSNPDKQGENRFDLLDITITPELRYTNLGPLIDTEWFVYNS