NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306867_1010778

Scaffold Ga0306867_1010778


Overview

Basic Information
Taxon OID3300028415 Open in IMG/M
Scaffold IDGa0306867_1010778 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #831 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2305
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030943Metagenome184Y
F046097Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0306867_10107782F030943GGAMPTIHVVAMSNQIEANEIEQLETSPSVDSGIVGDLLIGELDSWHVGICKIEKDGGGLLVCGETGQVVERVDTDVWKTSVLSDTEVKSLAEIADMINSAIESECGDL
Ga0306867_10107783F046097GGAGGMSDRLIPLPALLSIAMAAQQVSAVEIEAQNVSVDREGDMYSLRIIDTNSKVHHLEAGALTLNDYGFSTSGCEISEYGKVVTVKRLEAGSRYIHLSTE

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