NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228627_1086676

Scaffold Ga0228627_1086676


Overview

Basic Information
Taxon OID3300028414 Open in IMG/M
Scaffold IDGa0228627_1086676 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 33D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)754
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076876Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0228627_10866763F076876AGGAGMKNINRFYAVLITMTFGFSLISNVSAEDKNFLWESDGSLTIVDGAKDSGYIIEDGEVKTYVIPSDTEKTFIQDGPTGELIVCDPSIGCY

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