NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228643_1044358

Scaffold Ga0228643_1044358


Overview

Basic Information
Taxon OID3300028396 Open in IMG/M
Scaffold IDGa0228643_1044358 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 55D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1117
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028965Metagenome / Metatranscriptome190Y
F066527Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0228643_10443581F028965N/AQGAKDTIKRCRPSVQVEIVPKQCTLFGYDPQDLYDYMAQHDYVCVSAVRRPANKEQRGMWFGKDIGMTHRQIKKYMDRLFVPREVHEATDYGAMAQADNTFGQLFS
Ga0228643_10443582F066527GAGGMRNYHEDLLDEFGDDLERIFGPTEERTKGLTSLAGQPDGDLKTLLKGLKTKVIDCSGFMPKRQPFLNVVKEVLRVMRDSVDASTGKSIFYGYNLPVFVEQERVQGADEFAWEDVYIDYNVQRNIDVAHIIKDILIEWDTKLCDPAHGRKQSDGTIDINDSQHATCSRALVGAGVCPATYIISDSKSDNANQFGARNISNKTTEWFDDYKVRVYRAQEMEKDGFPAKAGDAPYLNMFNELAEFEA
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