Scaffold Ga0304730_1070911

Overview

Basic Information

• Taxon OID: 3300028394
• Scaffold ID: Ga0304730_1070911
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1607
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035768	Metagenome / Metatranscriptome	171	Y
F039639	Metagenome / Metatranscriptome	163	Y
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_10709111	F035768	GAGG	MKITVEDRLLAAYQAQKLRLRDREDEDFRAQVEAKVFEKIIVDRVRRNLRLDLDKGTNVDVEV
Ga0304730_10709112	F081346	GGAG	MAKPDPNKPIYHTNPPNTVPTRVIPSKPGTYEQVVVPETEANPDKPKKPKKPRK
Ga0304730_10709115	F039639	AGGTGG	MNIDREFIKWFYEDAYPEQGSNRRQVYGMTHNDVNINVIDYWMREAFKAGAQAATHGYEVNALEQFEAFNINRNYPL