Scaffold Ga0304730_1034590

Overview

Basic Information

• Taxon OID: 3300028394
• Scaffold ID: Ga0304730_1034590
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2580
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009801	Metagenome	312	Y
F070880	Metagenome	122	N
F091450	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_10345901	F091450	N/A	YDECLHAMKTKAIMEFEYPEDEHKLMFAVKGADMYATLANIKLAITREFKHKADMEAALLRVRELTDEMLNNLDH
Ga0304730_10345905	F070880	GGAG	MPRPKPPMPLKGRNMRMSDLEWLMFQELGGADWLRTFVKKKAKFPTHHYMFKLQEQNDSTSK
Ga0304730_10345907	F009801	AGG	MNECKQEYCDFIGSRAFENDGGWSYEVWQAAQQAAFKRIAQRFAGGKNTMYWGHEIADYALFLIKQDVQE