NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304730_1031260

Scaffold Ga0304730_1031260


Overview

Basic Information
Taxon OID3300028394 Open in IMG/M
Scaffold IDGa0304730_1031260 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2752
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006112Metagenome / Metatranscriptome381Y
F007524Metagenome / Metatranscriptome349Y
F008493Metagenome / Metatranscriptome332Y
F014848Metagenome / Metatranscriptome259Y
F099293Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0304730_10312601F099293AGGAGMSDYKQRLDNALIQLQYIIDEEFEDNQTVQDAFNNLAIILDGESE
Ga0304730_10312602F008493N/AMTSERGDSYIGLTRKSLPNADKVVAERWRKHRSRAVNENRLWALYIYLKSGGLAMNWTHEIIAVIRGRKEAYAYERELVKLIKPELNDQYL
Ga0304730_10312603F006112AGGAGMKQDYTMYIYKTDRRTKSGERLVSTTVWPDRTAEGMKREINGLYWLYLPKDGYRFECVPTMKTVTNLMSGAQIQIPHDTPRACDPSSELYWSM
Ga0304730_10312604F014848GGAGMTNYYDTIAEFERDGYDIIVDKTYEDMHPRDCFDDCCDVEQICEDINSGNLDWFMLRVRVLVEGLELGSAYLGGCLYKDAREVLTDGTAEDFIAEAMVEAKSQVYRLSKKFTELSYAVDAEGATA
Ga0304730_10312606F007524AGGAMRKATKAHAVAINKLMLPLINTVAYITEDENDLGMFKMYADDIAHNIAALCVFNSTLDAEVLHDNIMRQDTCPREHFYTVLQYIEDNALINANAFCCR
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