Scaffold Ga0304730_1014386

Overview

Basic Information

• Taxon OID: 3300028394
• Scaffold ID: Ga0304730_1014386
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4488
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009071	Metagenome / Metatranscriptome	323	Y
F043358	Metagenome / Metatranscriptome	156	Y
F074866	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_10143863	F009071	N/A	MPGYPDCYDEWSLNKYVYDGDHKMFEELYQGTEEECRQYAYENYTDKEQGDMCLMDWEAREWSV
Ga0304730_10143867	F074866	GAG	MTETIKTCHNCKHYKDYDGVFDWISSRIFGFPTLQKCFHPNRVKIVDYVNGTTCPYTTCSTERSYGNCGIMRDNWEAKE
Ga0304730_10143868	F043358	AGGA	MHLGEEQMKVYDYRIVEDLVLKTLKPHFFIQYYHLTEEKYYMYSNDTFQTLQEAQEAIRLIRKYNEPVYHYVE