Scaffold Ga0304730_1011585

Overview

Basic Information

• Taxon OID: 3300028394
• Scaffold ID: Ga0304730_1011585
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5136
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F062749	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_10115857	F041191	GGA	MRLLFRPTKLTCEFIVPDIEKSDGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGERTIQRLGRYAIGDLVKCELNWGSYIECKANDGYAFRIAPRHSLPIGYMLYPYAEKDGVEGVKMDIDIEINNLKII
Ga0304730_10115858	F062749	N/A	MWAVAALFMSFWAVSFAMSGVYYDNSELLTFSISFCASLVSAVCGAGFMQQWMKR
Ga0304730_10115859	F044325	N/A	MKQLIQRLLFGYRNNPSAYTPKGGAKLTYKGHNAEAIHSALVLLKFQLQNGKA