Scaffold Ga0304730

Basic Information
Taxon OID	3300028394 Open in IMG/M
Scaffold ID	Ga0304730_1010060 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028394 Open in IMG/M

Scaffold ID

Ga0304730_1010060 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5576
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (70.59%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5576

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (70.59%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F024558	Metagenome / Metatranscriptome	205	Y
F033434	Metagenome / Metatranscriptome	177	Y
F039639	Metagenome / Metatranscriptome	163	Y
F039640	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_10100601	F004133	GGA	MKYTKEITDKLIADYKAGVSVSTISTTLDVPERSVIAKLSSLGVYTKKSYVNKRGETPVKKSEHIERIAELLDVDEELLESLEKVNKTVLKLIENKLSQTATESDLLEVN
Ga0304730_101006012	F039639	AGGAG	MNIDREFIKWFYEDEYPDLGCNRREVYGRTQADASIDVVDYWMREAFRAGAQATLDKTEINALQEFEAFNINRNYPL
Ga0304730_101006015	F024558	AGGA	MIVILYTEDFEPIIPVDLPLWLLDRLEQEGAVRVAVNRPSGFTDVRIPVGNLDTETPTVRIRYEKLRWRDGTLKTLLVTPDEELALTLNPEWLPGQRGPIHTYMGAMRKMHEELIKQIRKNQD
Ga0304730_10100602	F033434	N/A	MLFKKQEIHSIDFTGTEGLNLEGWETWAEQMQLSHLHGWLLPQLVAWYGSWTLVLDENSNYDCLATVKLNCSDPKSRAFYMLSRVKRSLLVSQQTKTPDYASLTPLILMGLKRMQGINYETFRSSTGLQYLLEPRLFDAVVLGSEDLEVCNGLGSNRLLEIQKQGLTTKSGKTAGSMKPARSTWSLTGIQDTEIAHLPKLTQTILTQCWLAHPELRTPYMILDLQDWDRMPQPLVTNDIFKAVQTQQPTKTKELADVLPWDL
Ga0304730_10100604	F039640	AGGA	MVVKMNIDRLLLEATRQEGEIDILHYTNLVLQEACRLIKETPITGAFTTFDQAVAETQRADCFKSVYNQIVKNIEDATNT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0304730_1010060

Overview

Ecosystem & Geography

Associated Families

Sequences