Scaffold Ga0304730_1007358

Overview

Basic Information

• Taxon OID: 3300028394
• Scaffold ID: Ga0304730_1007358
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6782
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003065	Metagenome	509	Y
F021263	Metagenome	219	Y
F070880	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_100735815	F021263	AGGA	MTDAEREMDLNMAELETENRRLRKVEQAALAVVKSFSNSIDYHTWDEALDKLEAVLKEKS
Ga0304730_100735818	F003065	GGAG	MSEQSLNIWEKALGWRKRQMIMKQLDPVTNQIRNNTLEEVAKEFDSMKNGGDTTASFASYVRSMKK
Ga0304730_100735819	F070880	GGA	MPRPKPEMPLIGRQVRMSDLEWMIFQELGGADWLRTLVKKKAKFSTPYYMLKLKEQNDSKSR