Scaffold Ga0304730_1004153

Overview

Basic Information

• Taxon OID: 3300028394
• Scaffold ID: Ga0304730_1004153
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9552
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (26.09%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F003659	Metagenome / Metatranscriptome	474	Y
F005775	Metagenome	390	N
F008615	Metagenome / Metatranscriptome	330	N
F025444	Metagenome	201	N
F036110	Metagenome / Metatranscriptome	170	N
F058806	Metagenome / Metatranscriptome	134	Y
F094995	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_10041531	F058806	N/A	MSWQIPTQIEQDIIAGKAKYQTFQTGNGGQSILQVPPNSYVVIFGYDFSPAGGGITAVDYIGAPVTATLDVEKIRFFQTQQISFYTGVDFFPFIHHIPTNNSIFPFEGDYQAGFTIDTTPIARQV
Ga0304730_100415312	F008615	N/A	MNTPNTFGAMMFSRFIKKGWHISFTDSYQDRVCVIPPDRLDAQHVFGIYIPVMRHTWQPDLKREWWAALQTKDCMLGPKFEATAHPDDIERFAAFAAWIGDLLRNPEKFT
Ga0304730_100415313	F036110	N/A	MEILVFAATVAVSLVGFLLAREMNRTSEELKLLRQDVFRLSVDLAKLQTRLDDLV
Ga0304730_100415317	F003659	GAG	MPLNVNQVMDRYLIALEDVPVYDYPNGTRIGTINKGNATARVYSYVTRPGGQVWFMFDYTIPGTTPGAYYVLDKEGRFRISQAPGNAVISPSSLPGVDVFPAGSKIKTFALYGIIGVLALLLLKK
Ga0304730_10041532	F000710	N/A	MANGINMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSTTTSAAPSVITNGMQLRVTLTINNDVVIDDVVAHELGASTGTGISTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0304730_10041533	F002287	N/A	MSQINKLAYVDGKLGAPSDGQQTTRILFNTIEAPGTTSGLIFFKTFQGLTNGQTNLTQNKLDSMESMVIKTIWLAQYSTAGVLQTFGNTLGLNFQQTLSIIVGNQQVVKNLPIQFNQGVNGQSFDRLHSNAGVDFFGTPSRQNQAAQPCEIRLLTDIVIPPQVSFEVRIDSTNAAYGTGAVVCALSGYGKIFSAGNTF
Ga0304730_10041537	F025444	N/A	MYLQLAGLEPLDTALNPLAPGAPTYKYDQMYLGQSQDIILPDALFPPNVEGYAKALKDLGDLYGQYTKGKKTPAAVVKTPGMSVIDPATLLLIAKGIYAGVQALSVVFRGQVATAARQRITELYNGNNFNVQNLNKLTARQISDQITAIDSQINMTPKTQFGRQMALARFRLVYQQRFDQVGGGGIGNLPGWVLPAALGLGALLLLRGRK
Ga0304730_10041538	F094995	N/A	MVLKEKYTTLQRTLDAMKTQIEDSLSFARNFVPRGETPRSLFSLLKQHTTYRHDPPGVELLQSMPTLMHNNFYGIPGAGDCDCFVIAAVSSCVVEKIPVRIVVVGNTRKNPTHVYCEVLDGGRWTAFDLCSPFYGETKKYRYLSRIKVN
Ga0304730_10041539	F005775	N/A	MKKQRPIYTKAQHQIVTPAFVEKKIQMHKTVKWTTKDDRELFIMASASVTRYVPKSEHNNQAPMGFFNLQMGHYNKISIHSRDFEQLADVFDQITLFLRNNANKLDQVVTKELDTYTSHHLTNLLNNEAKP