Scaffold Ga0304730_1000826

Overview

Basic Information

• Taxon OID: 3300028394
• Scaffold ID: Ga0304730_1000826
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25210
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056554	Metagenome / Metatranscriptome	137	Y
F078637	Metagenome	116	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_100082618	F090310	N/A	MSSTLRTIADRLASGLQSVTWGIPSTVVERKNWASLDVDSMSVPHVFVVPGNADVTRISRLMMQVDYTVTVFVGRHVQNDTEVDGMLDLADSVMLQVRAHSFGSSIIWPTGVTSPQSVSIELNPDDALTERNVWRAVITATYRVFESNVLPTA
Ga0304730_100082621	F056554	AGGA	MAITLGKDASATPPFGSGIISATYTEECETIDISNRSNVGGSAGAPGRKVAKAGFTVKTWEIECHDATSLITSLEAAGSSWSVMSVSENIGIDGAVTYNVTAKEFA
Ga0304730_100082622	F098561	AGGA	MAITLGKDCSISLGGTIASARSVTLSESARTIDVNPYGSRYSCVYQTGYECSVSVELNDSADLKSAFDNMHTGMPFQVSGGSAGFSFKAVMTAISESDPIDGVATFTLEGKMTDTRLTRGSG
Ga0304730_10008265	F078637	N/A	MSKDWITVEFLGGPLDGALRPVQAGVAVYYLANGAVIHAYAADEIHEGNNVRPVMRHFEIINFSSWNA