Scaffold Ga0304730

Basic Information
Taxon OID	3300028394 Open in IMG/M
Scaffold ID	Ga0304730_1000294 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028394 Open in IMG/M

Scaffold ID

Ga0304730_1000294 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43684
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (16.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

43684

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (16.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F007860	Metagenome / Metatranscriptome	343	Y
F009958	Metagenome / Metatranscriptome	310	Y
F014573	Metagenome / Metatranscriptome	262	N
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_10002942	F034772	N/A	MKNLIDYFTPTTEEHKSFLRHFLSTLTVFVVLGGMFYCLMYFKAL
Ga0304730_100029435	F014573	N/A	MSHNTKCSIQTMIYLFDMHIQDEQLRMEVQKLLAFKKRNNIVKEIQSKGVTFHFFQLTNFLEGRDVSLSTLKKIDYYINK
Ga0304730_100029445	F005814	N/A	MELELLSSRINLNHTCLKLQVSIDEIKAKNPHRNDLITSMEQTMHEIKKAIFIYQTLEKEFRATRQINFDLQHLNLELKQEVKDLKKIIEFNNAEL
Ga0304730_100029449	F006463	N/A	MKAGTIYDQMDWWQRQWRGSFDLYLYLEICRIKKNENQIQKPMKRFKATFKTWAYVGAPMKLETRIVEAYDTQHVKNLIQKNDDIIMEIKQIEFTNNNK
Ga0304730_100029450	F009958	N/A	MENRNLELWNRGWELLYEFAGWQFSIAGTWEFNDWDEVSEYAFIELDVEVSEKWIIETDDHLQPHVLGVRLLEDLRLEMQEIINSDLANYNFWEWKTSNDDSNYTFYHEL
Ga0304730_100029453	F034772	N/A	MKNLINYFTPATEEHKSFLKHFLSTLTAFILLGGMFYCLMYLKTI
Ga0304730_100029462	F007860	N/A	MKSNYLASLYFIFGYATSMFMMFEGQDNYIVLGGVTLFFYLTFSLTEALEDLNL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0304730_1000294

Overview

Ecosystem & Geography

Associated Families

Sequences