Scaffold Ga0304730_1000173

Overview

Basic Information

• Taxon OID: 3300028394
• Scaffold ID: Ga0304730_1000173
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58439
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (49.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011584	Metagenome / Metatranscriptome	289	Y
F020169	Metagenome	225	Y
F044489	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_1000173110	F044489	AGGAG	MNYAETTLLNVKQYCLSDSKDFQIWTNKGTTYHWNRGKDTASGLINGVVRKLAGIDPSGHQIWVVAGSLKISPNGTILRWTGMPRKLQVMFGSVNSIIFDKEIA
Ga0304730_100017313	F011584	AGG	MIEYITTFFALFFTDVFYTYYLRAVQNDEVIKSSIWSVVVFFIASIAVINYTSDHMLLIPACLGAFCGTFVGMKLRKKAE
Ga0304730_100017390	F020169	GGAG	MSSTVRISWSREFDDQQRWNDVCAWAIERFGLPGDRFQSHANVNYMDFVFKSNKDALLMALMWNAPIVPNDDLAVEHVGRMFNA