Scaffold Ga0304730_1000024

Overview

Basic Information

• Taxon OID: 3300028394
• Scaffold ID: Ga0304730_1000024
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 199903
• Total Scaffold Genes: 287
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 217 (75.61%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F007110	Metagenome / Metatranscriptome	357	Y
F007305	Metagenome / Metatranscriptome	353	Y
F008812	Metagenome / Metatranscriptome	327	Y
F009680	Metagenome / Metatranscriptome	314	Y
F012108	Metagenome / Metatranscriptome	283	Y
F042870	Metagenome / Metatranscriptome	157	Y
F043902	Metagenome / Metatranscriptome	155	Y
F061803	Metagenome / Metatranscriptome	131	Y
F070037	Metagenome / Metatranscriptome	123	Y
F074805	Metagenome / Metatranscriptome	119	Y
F093303	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_1000024102	F042870	N/A	MFNFNELPDTKIPWWDNHYEDTYSEEIEDGYPYDMGTKVQE
Ga0304730_1000024104	F093303	AGGAG	MTKDEKFVIFWLYNRVAKTMPSNPIKGGDNDIIVDGINVTETVRKLLQDRLFV
Ga0304730_1000024111	F043902	GGAG	MTVQELRNCGYKVRVLHNRLYNGYYKWQVGSKPVEGYGYGPIDPDTKGGSTQIIIDSPHGSHYEGLAICSKKENYNKKLGVRIALGRCNVNQTFYTQYSQTKATNCATPLPADWSAAGIAYRDE
Ga0304730_1000024140	F061803	AGGAG	MQIDITKQEAWKLMDAIKAYMSDYTVTGPVHKTFDTITKKLKEVVKE
Ga0304730_1000024156	F008812	AGAAGG	LTRTEIMIQWIGILITIVGLAYTGVKDYQKGDIKIPPLRHPSQQKQVLTKPTYPVQYCLMAYDPNIDKVFYLHENGQWHDYAPQQRRYQTTPQPYQDQGQAAVASSYGSQGTPQYYYGQSPQASANPIR
Ga0304730_1000024159	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGNTLPDMWFYTHIYDARLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKVAPKRPKSKVKAEAWRKALPKLVVLNATKFVVCPEIRRGRAEITCTGTKDSISCDLCVRGLANVLFPAH
Ga0304730_1000024162	F012108	GGA	MIKIELSVRESLNMIANGCSLDMFDKIVCALEVALGVNQRRVVTITGGMNLDNRIPCIKAIRLHTGWGLKEAKDWSDYLVGGWKYDKWHPAPAGVKHSMTLKTPEAAEALLRELTTLGCEGFLS
Ga0304730_1000024172	F074805	N/A	MDVRLVFNLKGFLMSDFVVLTGILFAVTCAVVGFVFYSVYGGSKASLANAKDGQVYNFVYQQPLHGTHERFLAKVVGKQTLTADQIARLNRKSRYRIGDPEFIRTANLVTCQTPDGKIRNFYAERVSNCRKPLLAKVLFKSGVASLL
Ga0304730_1000024281	F070037	AGAAGG	MNFTESFQEFSSRLSTTDLALYAGAGLVLWVLFKDKLSPVQEFLGGLLSKVKGPTPTSIAPIVVPSVDTVVVPKSVVGNKPDDTFFKLVVSWKQTRDLAVQSGCGEAVKVADQMFPFLSPNVCKKEDKVS
Ga0304730_1000024285	F009680	GGAG	MADESLTHFWQIVSTTSITIIVTMVGFWVGLVKNMVTKHDVTHMIETQSPYINDRQFIMDKLASNKEVQASFANALQRNSEVMNELKIQIMVLSKTLEALEDRIEK
Ga0304730_100002482	F007110	GGAGG	MNCIYCKNCVGVERYEFLIETNRNIVCKECSAEKKAVGFMDWGHKTAPSLVMVPSNAKETIRILDRANRRAR
Ga0304730_100002483	F007305	N/A	MKIIQKTIKKSYENWQPNSLVRCYHYAAAFDGTKMIEFAQNNPIKMSTKAFRIGKRFNIPKYLEYPYVHSESHLISKLLDRYNTIDPNWAICVLRINRQGLILGSKPCINCSKLLNAVGLNEIYYSDDNGNFVCPTKTIKIEPLTTPIAMI