NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304728_1240692

Scaffold Ga0304728_1240692


Overview

Basic Information
Taxon OID3300028393 Open in IMG/M
Scaffold IDGa0304728_1240692 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)610
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104370Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0304728_12406921F104370N/AIVGHVYTNTKNIGNKITILSRNTSGKRTLIKTPLHAVTDHNYRKQYSRSKLARGSAISKNCNSRCSAKTPCNKRCQQARDKYQLALAKAKYKKDNVIKYTSTQLNQRYYSGQVANGACNSRCQAAKKRYQQQRTQYMKTFHVPCQNGHIKNKGTYNGKSLSKQGNPSGDTPGDKTTVGGYGGVAKGRPLGSPGAGQINWPNSA

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