Basic Information | |
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Taxon OID | 3300028393 Open in IMG/M |
Scaffold ID | Ga0304728_1013219 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3967 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 3 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001106 | Metagenome / Metatranscriptome | 776 | Y |
F035307 | Metagenome | 172 | Y |
F058150 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0304728_10132193 | F035307 | GGA | LDNSSLLVTAASGLQKTMVGTKGAILKDSTVAQISAAIYYQAEVVSKITTNKQFQARFQSVIFKQLQQDFGLYIDAQARVNPQSLHHVYEWNKVGNSGSRLFKLNITERNGLSFKLGSTFLMSKSPVPNSFGKRKYVFKNKASVMEAGMPVIISPRAAKRLVFETSTGTVYMPIGASVTVTRPGGGKATGRFQIAYARFFTGNLVNLSIKRSGFQQIFNSSLTKAMRLPSEVRKVKYSFSANTLNMQAESAIASAFGGI |
Ga0304728_10132195 | F058150 | N/A | MEILVGSNSPVTHKVFWQGQLTDSDSLPTVRLYDITEDPAISPAINPATILATLTPVKSEADAGTYIVYIPLTYTDRQRQLKLSWTYTVGGVSTQKDNKVFVQTPYTDMTQVIDSLGLGSDYSDPNSKSYAELCNAEKYARKLIEAYTKQQFFLYDDIQIAYGSGSDVLPLPYKITTLYKLYQNDILLLDTINSINNWNYNTIISESGFGIRVNRANMLDNTVYTANGMVPPTINDTWNGSFNTRSTYRVQGKFGWKDIPDEIDLACIELMKDYFSKDKIWRNKYIKNIKTFDWEFEYNSGTYSGTGNLYADQLLLPYVINQMVVI |
Ga0304728_10132196 | F001106 | N/A | AIIEEPNKGEYMSFETLKVAELRKVAEDFAVDTDGLKNKTDIIAALAEEGVTWSVYQKTIKDIEKAADEFSEEAEEILPRFNPDAQPENTMLVRMTRENHRYDILNYTFTKEHPFVAMTSEDAQEIFDKEEGFRLATPKEVQEYYA |
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