NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304729_1030711

Scaffold Ga0304729_1030711


Overview

Basic Information
Taxon OID3300028392 Open in IMG/M
Scaffold IDGa0304729_1030711 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2172
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003826Metagenome / Metatranscriptome466Y
F004641Metagenome / Metatranscriptome429Y

Sequences

Protein IDFamilyRBSSequence
Ga0304729_10307112F003826N/AMDPITIGLAFTAAQSAVGYIKQAIALGKDVHSLTGQFSKFFESSDAIHRERAKIKAKGSRLGKTDAELGHEALQIAMHSDALRTYERELKDMILWQLGKPEMWEHMIKERTRLFKERAEAEQAEAERLLAHKKKMADMFIFAMYFIAGSVILFAIAMGGVAIYGAAEEKRIYEQKVADRAAVIRRQAKEREAAEKKEIDNYTKN
Ga0304729_10307115F004641N/AFAILPLLLGSVGYLINALGSIQHDVTILNQKVSLVVTTDNKQASNSGAELAREKLRQDLEKEIQHNRDAIMENRQHIAIMEDRMGVKKIGPMGNKD

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