Scaffold Ga0304729_1002385

Overview

Basic Information

• Taxon OID: 3300028392
• Scaffold ID: Ga0304729_1002385
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11295
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304729_100238512	F040590	GGCGG	MSNGLTKGINKKLEAFSGSHKRAALLANSVRDTFNQNPLSDPHLNNINGSKFTKPKLPTK
Ga0304729_100238513	F001059	AGGA	MATYDIEALKTDLPNAKDLAQFIYDKVGLSLDFIGKPKEDQYLVAKNALEGKKIPQDYVTELNPYIDRKETIPMDELKPLPPRPADLPDMDSQIHFFGATNMPHPTDPQSDRKVQINFRKYENGLITYQIMGPVEQQAIGERLNKFGQRVPEKYTWLDPRTEETVMRRPDGTYTEKGRGLHSYCAGEKGGGIWSLIDRNITEITQKNVVNPWA
Ga0304729_100238514	F006264	AGAAG	VGLIEEPSSAFRQRLSAQAEVCARKTLEWLQKDLQGDRALPPQDVYYLASAADLLLTMRDLYGKK
Ga0304729_100238516	F004695	AGGA	MLDKQNIIVEYIEAPSGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEADSEQAVQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPEESDATQQEEMDSAIKANTIYKAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTLHECKAQFPYIDLEKMAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADKFSRVIMLTTAWIRKDVDNDGEEEIVEVCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFMDAEEIQRGVSAMFILDRKFDANKHVFQFQPMQGNLAYVESSMQRFEADKMAMIGMTSPSDVLNPEAMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYADDYNIQQLAGVCGKGKPFMDAISMENYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFTALLAQLDPSVPELFAKVRRPFEDTLRVLGVKDVDSYLPTLEEAAKVMQSKAQQGPSAADKEIQSKTDLNNAKVQESQTVSALNVKKAEDIDTDNMFEALAAKRGKLSAVEID
Ga0304729_100238517	F003521	AGGA	MDSIETKSLILNIRNYFNRRTKASDAQKEADVNRKTLVIENGDCASRLMKNEDFALMFNLYRFDLLSRLEECRTDPERIENAFNVAGVRDFIGFVEKTEYLGKVAQKPNT
Ga0304729_10023858	F001915	AGGAG	MDWTLSHPLHDVDDIVEMADSVFGQEADGILTRDKNVFRKNVTIASTVQLFDKGREFLAVCRNWDEMRLLGYCWFDRGGYTTYANEEISNAKFHHVDLALPAKTRVRLINQMIDQHILWASTWNIPVICSTSIRTEHNAFMRIHQKRGFTVNGSYAWIRTENAIKELK
Ga0304729_10023859	F012670	AGGA	MKLPHPDDLIHGNIRPEGSHVSSDELKEKKRQYYQMKKAEKKALNIVTGQQPPKEPRPEAANPGGRPKSVVNRVTEYGALFNKLSDERTAKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLQALRKV