Scaffold Ga0304729_1001516

Overview

Basic Information

• Taxon OID: 3300028392
• Scaffold ID: Ga0304729_1001516
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15199
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012214	Metagenome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304729_10015163	F000857	GGAG	MDDDVKIDEKYYSDGILEAGIDGVFRHNDKLFNEVKSGTWSQTFNTPNIDYKVGAVDGVRYVQYDQKNVEEVKQFCKERREFHKVHGTDNPFFAGTAHMMQLPKCFAHEISSRWFNNRPWELIKQERKDKILFYAIVNEYYSDFVCHPSGKIPIPYNPSIPTK
Ga0304729_10015164	F005087	AGGA	MSLFIQSANTLVSRVAQWVGAIPSTLSITATAYNSTSAVITTSAAADSLIVPGDFIGVSTMLPYTAVLSVSGTSVTVSDPDGVWNGLTFPTSILKLPSQSSAEIMACIQLCELKMRTIELPALRSDPYNTNTPSILTTDANGMAPIPADMVFPILFFQESPPSNQQQGSASLGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGQKYVFTPNPGENVTIKAYYQKTFPFLFSPTGDTSNPVVQSNGILASFPEGYMYGTLEAYYDKNKNTDEAQKWLARFDDSYGLIEDQNYRGKWRGGDQHLTSEFQPRSMRYSFK
Ga0304729_10015167	F012214	AGGA	MSDFSRIRTPFVGMSFTPDVPSNALTAAEYNSGLNVETDVRGIKKIFGEQEILTAVPNQAIFMEGGFRNETTWVYIVATRDTSNNGRWYMVTTSGVSNITPGVGANPSVSLPNYIEDINITTSWVGNVFFINDGISNPMYFLPTNNEITVTSNAVWNYDVGVTKTVAGFMRNYCSPNVGNILIAGNLTKTSGGIDTNYPTTVRWSQAFANTGVPANWVPTLSNVANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPIAYQNSTAPIFGVRLLNQGRGLLNNNCWTNTDANVYGIDARDIWVFDGANFTSIGNQRIKDYFFNNLNPTYYGRVFMVNNTQKYQIEIYYPDLNSTGWCNKMLAYRYDLNIWNAPKDIQNACMGTEGPKVVSGAFNLASRVVTYAQASGTSKKLIQTAVGNSFINNTAIPCLFERNNMAMQTAQGPVPFSSKVYVHRLLPEISGSGAINITVGGSDSTAKASTYGQTGITQIDTNTPWVTTQQNAVRMVSVKVESNDNTNAWNLTAINWQTTIVEDSF