Scaffold Ga0304729_1000259

Overview

Basic Information

• Taxon OID: 3300028392
• Scaffold ID: Ga0304729_1000259
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38739
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (86.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001937	Metagenome / Metatranscriptome	614	Y
F034803	Metagenome	173	Y
F062381	Metagenome	130	N
F094772	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0304729_100025925	F001937	AGG	MNPDLATVIYSYFFVGITILAGIAIIARHTISKYTEELKDKLNRIEYALYNDGKTGLINKVEELLENQQSIKIDVEVMKAKYELD
Ga0304729_100025935	F094772	GGA	MPTPAEVEARLIALSKEIDEAHTDLVEAENEFHIATAQYEVAMAKSRIKNSHIDMKMTAPVREAQCLIDNEILHNRVALAEAQVKASRANSSRLRVQVDITRSVSSSIKASMEL
Ga0304729_100025948	F062381	GGAGG	MAKILCKGQHWEVKDGQLLLDTPAGQELVKTVINTLSGQIRMEIYDQICALPLIQDRKKLVKLGIENVALMVQDACAQIAIGQKK
Ga0304729_100025966	F034803	AGGAG	MTAQTISQTPDPLNIQVRQNQEWAINFSYQDSTGTAISLAGYTPLLQLRTSALAKTSALSLTTGSGITFNATTLPQVQVNTGVTVAPGKYEWDLKLTPSNGEAIYLGRGTIQVDAEVSR