NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304729_1000226

Scaffold Ga0304729_1000226


Overview

Basic Information
Taxon OID3300028392 Open in IMG/M
Scaffold IDGa0304729_1000226 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40253
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (90.16%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F001599Metagenome / Metatranscriptome665Y
F001706Metagenome / Metatranscriptome648Y
F060868Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0304729_100022612F001599AGGTGGMQETVSIAWCDNGMVDGKFMQGVTDVMLKSGINFTSTLRSQGNQIARQRQTVIEYWYEKSKSDWLLWVDSDVVISPEKFKLLWDNKDAVERPLVTGVYFTTDNPEEPLMIPMPTVFSFTNKGDGSFGLTRMHPLPKNQLIKVDAAGFGFILMHRSVVEKVKAVAPDGQMFMEMGRGTKFIGEDIFFFALCDTAEVSLYCHTGATVPHMKRFSFDEHYYAAFFAGEEKKSNLILPKHHRK
Ga0304729_100022619F001706AGGGGGMKHWEYHPEYQDNCFGCKASGLQMNTGDATRDIPDKKWTAELQAYRDARSQGMQPAGTSMRHIQEAYKASETLGKAYNSETMPKAKDINKKSAAVLKEIGQI
Ga0304729_100022620F060868AGGAGMAFYTFVTPTVSEGPIGDHRLFYFRKQNKGLTIVKSGSTYSQIRNPVDEDLLAYTAVYRGGYNHTVDDTIKAELIAGGVGVTEANFKLQ
Ga0304729_100022643F001531N/AMVVKEMIDWNRIEPWDYIVIGVASEYHKKYDMVELEDIKQALYQWFIEHPNKLDTWEAIGQKDAKNLIYRSLRNQALDYCQRWKAKSIGYEVSDNYYYDPELIEAILPAVLRGEIGVTHQLNLGGPSRPSAPSEGGNITVIMIEVDYGYWKLNKEDRKILFLKYAESIPFSEIANELDIPSEDAARMRCKRAIRRLLNKIGGYKPYRDEDTNNQDEPTEELNIVELE
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