Scaffold Ga0304729_1000001

Overview

Basic Information

• Taxon OID: 3300028392
• Scaffold ID: Ga0304729_1000001
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 340548
• Total Scaffold Genes: 501
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 296 (59.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006141	Metagenome / Metatranscriptome	380	Y
F046245	Metagenome / Metatranscriptome	151	Y
F052595	Metagenome	142	Y
F093877	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304729_1000001101	F093877	AGGA	MAILPATGTEIVMGRVKKAYSNVAAAGGQNIRLSATLGAYVGQSASTQISLSSRFGGQTIPYTY
Ga0304729_1000001213	F052595	N/A	MTSEKPAQGIMLNADYVDAKTYTIACDCTDPDHSIHMWIEAEGDNETKDITLTFYVNTTTPFWKEGFSRIKSAWDILIHGYREDQHSLILKKQSALNLAETIKSTVNDLEKL
Ga0304729_1000001492	F046245	N/A	MWTYVLTFFAVFFTDLIYIYFVKSIQNDHPWRAAWWSMVVTFTASIAVINYTTDHLALIPALLGAYFGAYVGMRVENITDRQR
Ga0304729_1000001493	F006141	N/A	MIIEIFFYGFVTAFGWWTANHYVIEPYFPPSVLEQREDKKKEDKKD