Scaffold Ga0306868_1020114

Overview

Basic Information

• Taxon OID: 3300028378
• Scaffold ID: Ga0306868_1020114
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #832 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1588
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007738	Metagenome	345	Y
F021053	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306868_10201143	F007738	GAGG	MSGAAIAAEVALAYAEAGRDAGDGLGAVSATISRPGQPTGPEWNPTPGAPLVHTFTAKPSAKAYTQRTGLALGAGELVYSLVNHGVTITPSTSDVLTIDGINWPVQEVIPMDSAGFVISWLVKVSK
Ga0306868_10201145	F021053	N/A	DGTEVKLGGDVPISADLAKNEGVAGWIGSGWLVPMTAKAEADAKAAQPVMPTGKK