Scaffold Ga0306868_1010448

Overview

Basic Information

• Taxon OID: 3300028378
• Scaffold ID: Ga0306868_1010448
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #832 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2749
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045454	Metagenome	153	Y
F076655	Metagenome / Metatranscriptome	118	N
F102169	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0306868_10104481	F076655	GGAG	MLLEEAINKLVRDSVNLVLETPGYTIRSKQRDAPRPQGPYAVVDFLASESIGLEQRVFEDNDDNLDLTEKISGLRNITMSINFYRANATGNSRNARIGLVRESIQSLFSSAGVGLVSRSEVRDIDSPTDDGWEERSQFDLVLNTVATDQDIVKSIQAIDIT
Ga0306868_10104485	F045454	N/A	VSDEVNNMRLWRVLETIEKRLSGIEGKLEKVIRLEERVNKHEQVMARFGKRLDSGDERMMRLELWQAKHNPDMILDSLKANADTIGILRGKIGDLEDTGNVKRGHKDIGKGILMWVSGILAAILIYQSTRGM
Ga0306868_10104486	F102169	AGGA	MAGLINNTQRQFNLKILSKAGERVTVRIVPGFNVVDDKHWESFVSKDGKEVDAYVSELKEQGKLTFGKTQDDQELESEVSKSKSKSQPMPKAKK