NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306869_1066713

Scaffold Ga0306869_1066713


Overview

Basic Information
Taxon OID3300028377 Open in IMG/M
Scaffold IDGa0306869_1066713 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #833 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006455Metagenome373Y
F084902Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0306869_10667131F084902N/AQLAGYAPYDTTPTDIGYHIHKEDVLPAFREAYYNEAVNREI
Ga0306869_10667132F006455GGAMNQQVKPPAGWTEIEPEFDHQQQTFQRRRDGLVVAIEREGISGYNVVTLPENYYQDNQVIDYIEVGVEPEDAAEPAREWMEQNNRQ

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