Scaffold Ga0306912_1050778

Overview

Basic Information

• Taxon OID: 3300028376
• Scaffold ID: Ga0306912_1050778
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla E10 #628 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 640
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035569	Metagenome	172	Y
F054453	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306912_10507782	F035569	AGTAGG	MTKQEALTELMRKTGKGKMACEIALSLTGHNMEDAIERMKKSYPTLEVKK
Ga0306912_10507783	F054453	GGAGG	MKTSTLLKLTAVLITVTALFSSTMFEVFGYALLITITGCSGLICQTLEAKAPTKPVEPRDYSKQNYDAQG