NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306865_1100400

Scaffold Ga0306865_1100400


Overview

Basic Information
Taxon OID3300028375 Open in IMG/M
Scaffold IDGa0306865_1100400 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)542
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007251Metagenome354N

Sequences

Protein IDFamilyRBSSequence
Ga0306865_11004001F007251N/AFQVKKKGRPAVKIGKGIDVAIPQDTYKTFGKHLIHYPSLRDDYKLSIKYPSRSKNVGKVKVVSPEYRELLMDMLERGVLSDRMYDKLVNEEKEHFNQAVKASGLMETIKLKPVNEDTKDLVERFKVLRGQFIAGNNAPTLIKELRSVILHFMEKGQIQKQDGYDLLKELSAVEN

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