NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306865_1004010

Scaffold Ga0306865_1004010


Overview

Basic Information
Taxon OID3300028375 Open in IMG/M
Scaffold IDGa0306865_1004010 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3608
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017719Metagenome239Y
F020853Metagenome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0306865_10040105F017719N/AMLKDIHPLFELMPISKSLNFKIQIFWNNSVATATHNATNWTAQTSQFRAYNGTLPLMLNNVADGFNAALAGTLRASVYVGDTCYDTTQRTTGTLATGGVGKQVELHVQAVQMLPDIENNSAQNHLRDVSYHDYYQFSLKSIASGESFNHLVSNGISYLKAVLIIPHLNTLKKNINLFDDGQPQLLQ
Ga0306865_10040109F020853GAGMAIPNFKGCFYKDTLKKIEPSSSYIINLNSEFNEKDKRNAGSHWVALLTDDLKKAIYMDSYGEKETND
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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