Scaffold Ga0306865_1002082

Overview

Basic Information

• Taxon OID: 3300028375
• Scaffold ID: Ga0306865_1002082
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4952
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003482	Metagenome / Metatranscriptome	484	Y
F004242	Metagenome / Metatranscriptome	447	Y
F024135	Metagenome / Metatranscriptome	207	Y
F030562	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306865_10020821	F030562	N/A	PFGYLIFYRPTEAHRFLVGKQTITSIQFTLTDTQGNELNIFSCDAQITLKIEYIYKAEMRSMEEGTLNYELRKLAEVTKDNADLTGIYNPETNEFLRE
Ga0306865_10020822	F004242	N/A	MKKPESHRLGLKKQAHNMMRLGLKASDVAMATAPVALLGGPEMAPVASALEVAGGAGKAVFGLGSKLV
Ga0306865_10020824	F003482	N/A	MDELINIKQQDEFKKSVHNTYNLIKRDTGNIPSAEELNDTNKGLWVEHDDSDFAKVFNGLLDYTNDDEEFDNLDWNSVNYEVYGTDYYQEKFPGFADEVYEILAKSSEEENKVIDNRIPPLKITEGPVTVSFD
Ga0306865_10020828	F024135	AGGA	MSIKVISGHAIFNENALVLSQKFKWKLETDFDPQPNDLYIVLGAHELAYQLLEVQIRKNNSFGFIIMNSEQIHSQFLKNKYYISLMKKNIVCDYNTLTAQFLKETHNIKILSYFFFEFMKFNIKKER