Scaffold Ga0306865_1002006

Overview

Basic Information

• Taxon OID: 3300028375
• Scaffold ID: Ga0306865_1002006
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5063
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005583	Metagenome	395	Y
F040329	Metagenome / Metatranscriptome	162	Y
F102632	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0306865_10020063	F102632	N/A	VDYDNQTILCELSITPFEAFVRDMIQDTPADVHELTYDSNELFDMFKCYLQRSNTKYEINLIKFGVRLTNLKLNGISKAKGRVCNKKKFDVKLLKKHFMIGCQITE
Ga0306865_10020065	F005583	N/A	MAPPLTKEPLQILNKEFYKNLNFFGRDRLFNILRTKYGDESPSRRQVAEWLSHQEINQLYAPSKGKPKTFKSSMTTPNKILAMDLVNMEKFEVRIQILIQCDRHVVTIYL
Ga0306865_10020068	F040329	GGAG	VYEIERVYKPKKSYTVYEHKHEGLPDRFKEEELLKIVGDPQNKIVKPTTFTVSKLIKPVIKDNEDYYEVLWKGYREHTLEPRENLLEDFPKMVNQYEKKNKIKFYDSKNKKTNKITRRVYIGKKEDDE