Scaffold Ga0306865_1001677

Overview

Basic Information

• Taxon OID: 3300028375
• Scaffold ID: Ga0306865_1001677
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5612
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → environmental samples → Organic Lake phycodnavirus 2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018656	Metagenome	233	N
F030678	Metagenome	184	Y
F061267	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0306865_100167710	F030678	N/A	KTNSEASLLQQKKNDVLRETLPSVDFKQMLNTYYRNKDYKSFVILYLLLNYNTRNKDLVLRVVKDEDDINQKENFIFIRDKDVVYIRNDYKTKDKYGGKRDVIVAKKFFNAVQELDSLLIDNGNLDRQVKAVTHGINQSTMFKMLITQNNNLKSIAKSSRNRGTNMNTVATSYDIT
Ga0306865_10016774	F018656	N/A	MPSKYLFLENAQRNLSVWDNLPTLSQSSRECYISVSSVKLLFGDIPLFYAVRLKIDLPVMNYASSSNSIPVIAMLSQGTNNITSSGTTENVVFELIHADQIQLFSNDNLKRAKFVLENEDGEEIVLEDDDRLDIMLKIDYVDQLAVTNQYISEVPKHL
Ga0306865_10016775	F061267	N/A	MAKRETFFNMIQSSKYLDEIDLKSRDKQEKTFETGNFRWTLIKQYFGDELEIYIQYTNLHYLFENKLNHKLTKKAFHKEAILWKCYVFDAEYVNTKNMYCKVNKIKDGLIYTNFNVSKHHISYV