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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028375 Open in IMG/M |
| Scaffold ID | Ga0306865_1000998 Open in IMG/M |
| Source Dataset Name | Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8252 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Rauer Islands | |||||||
| Coordinates | Lat. (o) | -68.5558 | Long. (o) | 78.1913 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001894 | Metagenome / Metatranscriptome | 621 | Y |
| F004242 | Metagenome / Metatranscriptome | 447 | Y |
| F036509 | Metagenome | 169 | N |
| F037002 | Metagenome | 168 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0306865_100099811 | F001894 | GAG | MSESAKISNIHYIYQDRPNKERANKMAKRKLGRLGYELDERNTDKDVLTAKKGNNIHINYSGTNIQNPRDVISDVALGVGVQKINPQFKERRRTTRNIMRQYGDDNSYSLGGHSLGGSIALNTLSQSKSIRDRTKVAHVFNPGYTKAFHESIKPSDKKVKKELNDKINIHRVKGDIVSAHANKETAFGNLFEYKHADNNSDLSDKHALDTFMEKDL |
| Ga0306865_10009987 | F004242 | N/A | MKKPASPRLGLKKQAHHVMRLGLKASDIAMATAPVTLLGGPEMAPVASALEVAGGAGKAVFGLGSKLV |
| Ga0306865_10009988 | F037002 | N/A | MSASYSLDTPYSSQVIFLNSQNSIYKSINGEGIYHYNLKTPVQLPTNCKMLLSIQDAQIPNISPNVTSSNNQLSFSIPTFSKFFTITVADEDGDRVYSADEFINVVNEKILPNALEQFTLYGVYQPTQAKVKWFCNYPFEIINNDSYPTTCIDLLGFQKDFNNNLVQTGNVLLSSIPNPSFHITMPSCVNFSGTRFIFLKFKNISVNNLNSKGLTDDAIVRIDNNVPFGYLIFYRPTEAHRFLVGKQTITSIQFTLTDTQGNELNIFSCDAQITLKIEYIYKSEMRSFEEGTINYELRKLAEVTKDNADLSGVYNPETNEFLRE |
| Ga0306865_10009989 | F036509 | N/A | MSLHQMTQKLTPQQANVIPAGKFIYTDETFLVKPPTDPKGESFPRMGKELVPAHFSYAHHNPDFTPAAGGTQIAQNFNTYIYNAQTGFV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |