Scaffold Ga0306865_1000128

Overview

Basic Information

• Taxon OID: 3300028375
• Scaffold ID: Ga0306865_1000128
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41750
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (15.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008116	Metagenome	338	Y
F020291	Metagenome	224	Y
F087386	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306865_100012812	F020291	N/A	MYYKGTKNQCQYYNRKVYKGTESMKQDPFTTSYASIREVEENFYILKHKDFDSNMQEVSELPIDPLNNIQP
Ga0306865_100012813	F008116	N/A	MTLGMGLGMPRHRFIGGNQFDPQAQIQVDRIIAAGGTIEDTSVIDADIKFLKSIGLFANLKYAVDPRAGITQRIDGSDIFASKIFDYSGSDADTDNSQGSEQPKKGILNGITALDFDGVDDRLTNTNTVSFLAGEEMFSVAVYAQDFDGSEDFGMVVDKFSPDSAGKEFGKNNDTIFIFANLQNFTPFQNEQIIASGTSDTDNLSTAFIGNVELNQKTISINHIGKTIGSIRAVRISSLFYAKAKFQKNWDFSALPTESQRNAINTYLINQFNIPV
Ga0306865_100012839	F087386	N/A	MTKAELFKKYSINESHNVWENGIDNWMSVEVYRIMHDGKLPPSDDLSVMWVCDFLDKQKDTKWWAKNVMSQSQWGSLYLTAKRMVHSFAEQILKDLKKKEIEQ