Scaffold Ga0306906_1000012

Overview

Basic Information

• Taxon OID: 3300028374
• Scaffold ID: Ga0306906_1000012
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 201264
• Total Scaffold Genes: 245
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (6.53%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006142	Metagenome / Metatranscriptome	380	Y
F026883	Metagenome / Metatranscriptome	196	Y
F046756	Metagenome	150	Y
F070731	Metagenome	122	Y
F071737	Metagenome	122	Y
F087244	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306906_1000012161	F006142	N/A	MERRNRLILEFTEFNMQRFNSDSVRPAAHVDNPQLSTNAFDKHQDGLRQAMSRIDDILFTLKGTTAYSSLRSKLALEDQDIVSMKILRILRANSVHYDAYVSFIIDEDEYWGKISNVLGAEPNFKSEVFNDLDLYQPKEWVIKITGIIIKTVKKWLKPEPGIYKLINDEVTCYSVETGKQLIMSEGIEIELIRSHDDKIIIKHDNNYYNLVDDNYIYFNWWFEKID
Ga0306906_1000012180	F071737	GAG	MILTREVSIKISESNFQYYDNLGYDVTIGEYLLIPIDLLSRGSHREIKCKCDTCGVEKDVLFKNYVKYGNKWGEYFCRKCSEFKRKKTLKRNFGVDYPIQNEDLKKKIKSSSSSKEKS
Ga0306906_1000012216	F046756	N/A	MIEDFIDYEIVRNRDTVMLDRLQTFIRDNDLKMPNLKEIKKHYKIIE
Ga0306906_1000012219	F046756	N/A	MIEDFIDYEIIRNRDTVMLDRLQTFIEGFDLEIPDLEKIKEHYKIIE
Ga0306906_1000012222	F070731	N/A	MRGNPLDLLVHTFIKNADIFMIEDFTDYEIVRNRDTVMLDRLETFIRDNDLKMPDLEGIKKHYKIIE
Ga0306906_1000012230	F026883	N/A	MLQKHFHLQEYSIDSWPFWMFEENIKIVNEIVEEEEKNQGKQEQQQSSNFDANSMMKNAQSMTNNIPKPKY
Ga0306906_1000012232	F087244	N/A	MPLPHFTQISNVGSPGGPGTLPDEVVYLNLFEVTFILPVILQAQGRDPILLLENATKIDLNAANLTAFDIQSVTQRYKYSTREFLTTPTKTSGEVNIPFQVNVNQEGAMETWNTMKAWYDLVFNSQNGSLHYKSDLIGTIIVNQHDKKGVVLRRVTFQNVQMKKLDGYDLDWSSNDIIKEVTANFVWDYFIDEYIDQNFTINPPLVSGY