NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306897_1082207

Scaffold Ga0306897_1082207


Overview

Basic Information
Taxon OID3300028373 Open in IMG/M
Scaffold IDGa0306897_1082207 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)557
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069718Metagenome123Y
F082179Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0306897_10822072F069718GGAMVIPIIEELRESLRSTRVHYTTINAPRGVKILEDIIEGFDKRSGDGTHITELREGHGRQPCRYTQVRCVRFVLGAHVRNF
Ga0306897_10822073F082179N/ADHTAEERPGLIMLIGRNAVEVWHVARIEKRGGDLFLEKIDTFKVSYVMTFLKIHAVKSYEHVHPKQNARNAPGYICKVDGRGPHATR

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