Scaffold Ga0306901_1005599

Overview

Basic Information

• Taxon OID: 3300028372
• Scaffold ID: Ga0306901_1005599
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #767 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2325
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014478	Metagenome	262	Y
F024490	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306901_10055992	F014478	AGAAG	VSISGKLVRLLQLYQAAWKLVPADVSIGGKLVRPVQLYQAYAKSVPEDVSISGKLVRPVQPYQARSKLVPADVSIRGKLVRLVQPRQACLKLVPEDVSINGKLVISDHSRQ
Ga0306901_10055993	F014478	N/A	VSISGKLVRLEQLYQALLKSVPDEVSISGKLVRLAQLYHASIKSVPADVSIKGKLVRLEQPRQARKKLVPADVSIRGKLVRLLQLYQALKKRAPEDVSIRGKLVRLAQLYQAA
Ga0306901_10055994	F014478	GAG	VSISGKLVRLGQLRHACLKSVPADVSIRGKLVRLEQPRQARKKLVPADVSIRGKLVRPVQLCQALLKSVPDEVSISGKLVRLAQLYQAYAKLVPEDVSIKGKLVRPVQLYQA
Ga0306901_10055995	F024490	N/A	MPDATSETRMLSMLVCVSAVFVNASVKFPPLILSKALAGKLVRLEQSSQAAWKLVPEDVSMSGKLVRLEQPTQAA