Scaffold Ga0306908_1009943

Overview

Basic Information

• Taxon OID: 3300028371
• Scaffold ID: Ga0306908_1009943
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #899 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1937
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006455	Metagenome	373	Y
F020827	Metagenome	222	Y
F058558	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306908_10099433	F020827	N/A	MKHDIVGWYEIGQRWELWKDGQLRDFYIDHIHVLESDDPGGIEVEHYLSDGTMITKLTVTSFDVLPVVKNIEPVEKPDHL
Ga0306908_10099434	F058558	GGAG	MNINDKFRHRAFKAVVKTDDHDVAENAIIAGLSSVGVNDDEYRMLWIRDHFNTSGHNHVAVIFIVPTEYMMDLPTIVERGNATSISEVELQSIDA
Ga0306908_10099435	F006455	N/A	LRHNPGTARYKTGIQPMNQQVKPPAGWTEIEPEFDHQQQTFQRRRDGLVVAIEREGMSCYSVVTLPENYYQDYQVIDCIEAGVEPEDAAETAHEWMEQNNRQ