Scaffold Ga0306908_1005697

Overview

Basic Information

• Taxon OID: 3300028371
• Scaffold ID: Ga0306908_1005697
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #899 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2978
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006455	Metagenome	373	Y
F020827	Metagenome	222	Y
F027372	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306908_10056974	F027372	GGA	MSDDTQTRRQRAEDLSNEIIVSSTEALYDDYANLKSQTPSGYAPYGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDYPAPVCEDCEKPLNVNLLVHKSYDPELRFRLRMTEELGGFADTDCLTIEEIGEKAAERAAEIGRDYAPTDMFAPDEHYEIPTDSARYINIIAPQLRQLAGYEDGTGKGTYNTTPTDIVYDIHKEDVLPAFREAYHSEAINREI
Ga0306908_10056975	F020827	GGAG	MKHDIAGWYEIGQLYIDHIHVLESDDPDYIKVRQYRSDGTMIDELTVTEGDIEEVINGSNIQPIDKPDHL
Ga0306908_10056976	F006455	N/A	TGIQPMNQQVKPPAGWTEIEPEFDHQQQTFQRRRDGLVVSIEQESHAACNVVTLPENYYQDDQVIDCIEIGVKPENAAEPAREWMEQNNRQ