NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306907_1009040

Scaffold Ga0306907_1009040


Overview

Basic Information
Taxon OID3300028366 Open in IMG/M
Scaffold IDGa0306907_1009040 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1792
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006455Metagenome373Y
F058558Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0306907_10090402F058558GGAMNINDKFQHRAFKAMVKTDDHDVAENAIMAGLSRLRINDDEYRMLWTRDHLNASGNSRVAVIFIAPTEYMMDFPTMVERGNATSISEVELKSVDA
Ga0306907_10090403F006455GGAMNQRVKPPAGWTEIEPEFDHQQQAFQRRRDGLVVSIEQESHAAYNVVTLPENYYQDNQVIDCIEAGVEPEDAAETARAFMEHNNRQ

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