Scaffold Ga0306907_1000793

Overview

Basic Information

• Taxon OID: 3300028366
• Scaffold ID: Ga0306907_1000793
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12291
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003151	Metagenome	504	Y
F007290	Metagenome	353	Y
F016628	Metagenome	245	N
F104176	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0306907_100079319	F003151	GGAG	MTQFEPGDRVTHNPTGEEWMLIRVYGSYVIPAGFTPWKFGLASDCTLICACTTTEERENRHGHQ
Ga0306907_10007932	F007290	AGGAG	MNYTVALSVAAKATAYLQDNEGSMSETEVVVHVSALHLALKAIADHNAVELPPLP
Ga0306907_10007936	F104176	AGGA	MIDTVTFQKLKTQPEILCHGSGSEGAFSTVYEGPIPNTVVKVGRTNEDGWLFWAAYVMTLQNPEPWMPRILALHIDERTDSFQAILEALTPTQYPNRPSCFGGFPDVICGSRAMQNVPVVEALSVRMHLEAIQRITDKAEPFCFDAHVLNWMMRGDQIVLTDPFAYVAIDMEPHLYAMATQSRGRITFNEAKP
Ga0306907_10007937	F016628	GAGG	MKTFSINIAKAYTQADWRGLPAHMHHALVTLDYGMSESEAVAELDRLQTAYPWPEFHLTLTAVEIIRLAEKLYSSAPMDFLEAHQWDNQTSSTHEGD